ITK-SNAP Links

Related Image Processing Applications:

MRIcro

SPM-friendly viewer, converter, and much more!

Brain Extraction Tool (BET)

Use to skull-strip head images.

Convert 3D Tool

A tool from the developers of ITK-SNAP with a flexible command-line interface for common image processing operations. A great companion to ITK-SNAP.

NIfTI Quicklook Plugin for MacOS

Quickly browse through images on your Mac. Written by Gary Zhang.

Segmentation Protocols:

Brain Regions of Interest

Protocols for a number of regions of interest in the brain provided by the Autism Research Program at the Neurodevelopmental Disorders Research Center at UNC Chapel Hill

Open Source Toolkits:

The Insight Toolkit (ITK)

Parent toolkit for ITK-SNAP. ITK is a C++ libary that implements a multitude of image processing techniques. SNAP is one of the end-user applications bundled with ITK.

The Visualization Toolkit (VTK)

VTK is a C++ libary for visualization and 3D graphics. SNAP uses VTK for 3D rendering.

Fast Light Toolkit (FLTK)

FLTK is a library for building graphical user interfaces across platforms. The user interface in SNAP is written using FLTK.

DTI-TK

A free toolkit for processing, registration and statistical analysis of diffusion tensor MRI data. DTI-TK can be used in conjunction with SNAP.

Other ITK-SNAP Pages

ITK-SNAP on NITRC

The page devoted to ITK-SNAP on the Neuroimaging Informatics Tools and Resources Clearinghouse, funded by the National Institutes of Health. NITRC lists hundreds of neuroimaging tools and resources.