ITK-SNAP Publications
When referencing ITK-SNAP, please include a bibliographical reference to the 2006 Yushkevich et al. Neuroimage paper and, if possible, include a link to www.itksnap.org. We also ask that you write 'ITK-SNAP' rather than just 'SNAP' when mentioning to the tool for the first time.
2006 Neuroimage Paper (Preferred Reference)
Paul A. Yushkevich, Joseph Piven, Heather Cody Hazlett, Rachel Gimpel Smith, Sean Ho, James C. Gee, and Guido Gerig. User-guided 3D active contour segmentation of anatomical structures: Significantly improved efficiency and reliability. Neuroimage 2006 Jul 1;31(3):1116-28.
@ARTICLE{py06nimg,
author = {Paul A. Yushkevich and Joseph Piven and Cody Hazlett, Heather and
Gimpel Smith, Rachel and Sean Ho and James C. Gee and Guido Gerig},
title = {User-Guided {3D} Active Contour Segmentation of
Anatomical Structures: Significantly Improved Efficiency and Reliability},
journal = {Neuroimage},
year = {2006},
volume = {31},
number = {3},
pages = {1116--1128},
}
2005 MICCAI Open Source Workshop Paper
P. A. Yushkevich, J. Piven, H Cody, S. Ho, J.C. Gee and G. Gerig, User-Guided Level Set Segmentation of Anatomical Structures with ITK-SNAP,
Insight Journal, Special Issue on ISC/NA-MIC/MICCAI Workshop on Open-Source Software, Nov 2005.
pdf -
bibtex -
cited by
@ARTICLE{py05osw,
author = {Yushkevich, P. A. and Piven, J. and Cody, H. and Ho, S. and Gee, J. C. and Gerig, G.},
title = {User-Guided Level Set Segmentation of Anatomical Structures with {ITK-SNAP}},
journal = {Insight Jounral},
year = {2005},
volume = {1},
note = {Special Issue on ISC/NA-MIC/MICCAI Workshop on Open-Source Software},
owner = {Paul Yushkevich},
}
2004 Technical Report:
This is an early but much more detailed version of the 2006 Neuroimage paper. We recommend it as background material on the level set segmentation methods that SNAP implements.
pdf
Online Tutorial and Users' Guide
This tutorial gives step-by-step instructions on using SNAP for manual and automatic segmentation.
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