ITK-SNAP Documentation

ITK-SNAP documentation is a work in progress. There is a tutorial that was written in 2004, which remains largely relevant today, but does not include all of the recent features. To learn what features are available in more recent versions of ITK-SNAP, take a look at the release notes as well as some of the articles below.

Tutorial

This guide will introduce you to the most commonly used features of the software. The tutorial is organized into nine sections, and requires about 60 minutes to complete. Please keep in mind that the tutorial was written quite a few versions ago, so some of the menu and window layouts have changed.

• Section 1. Introduction
• Section 2. Loading a 3D Image from File
• Section 3. Viewing the 3D Image
• Section 4. Manual Segmentation
• Section 5. Introduction to Automatic Segmentation
• Section 6. Automatic Segmentation with Region Competition Snakes
• Section 7. Automatic Segmentation with Edge-Based Snakes
• Section 8. Computing Volumes and Statistics
• Section 9. Tips and tricks
• Section 10. New features in ITK-SNAP 2.0

Reference

• Keyboard Shortcuts
• Release Notes (Version 2.0)
• Hardware Requirements
• Building ITK-SNAP

Companion Software

• Convert3D (c3d) Command-Line Tool
• Continuous Medial Representation (cm-rep) tools